Datasets for Tree Structure Reconstruction
This page contains two datasets of tree structures: 3D confocal microscopy stacks of neurons and aerial images of roads.
All ground truth tracings available in this page are copyrighted by CVLab – EPFL. You are free to use them for research purposes. If you use them to publish results, please cite the reference below.
Olfactory Projection Fibers
This dataset is taken from the DIADEM Challenge. The Z spacing of the stacks are set to 1.0 to make fiber cross sections appear circular. For details, please refer to the dataset’s website.
Stacks and Ground Truth Tracings (18 MB)
Aerial Images of Roads
Images and Ground Truth Tracings (18 MB)
Software
Our semi-automated tracing tool for acquiring the ground-truths is available here.
References
The datasets on this page has been used for our automated tree reconstruction algorithm described in the following paper:
Field Guide to Northern Tree-related Microhabitats: Descriptions and size limits for their inventory in boreal and hemiboreal forests of Europe and North America
R. Bütler Sauvain; L. Larrieu; L. F. Lunde; M. Maxence; B. Nordén et al.
Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Switzerland, 2024. Comparison of Three Viral Nucleic Acid Preamplification Pipelines for Sewage Viral Metagenomics
X. Fernandez Cassi; T. Kohn
Food and Environmental Virology. 2024. DOI : 10.1007/s12560-024-09594-3. How to Support Students to Develop Skills that Promote Sustainability
S. R. Isaac; J. de Lima
Teaching Transversal Skills for Engineering Studens: A Practical Handbook of Activities with Tangibles; EPFL, 2024. How to Support Students Giving Each Other Constructive Feedback, Especially When It Is Difficult to Hear
S. R. Isaac; J. de Lima
Teaching Transversal Skills for Engineering Studens: A Practical Handbook of Activities with Tangibles; EPFL, 2024. How teachers can use the 3T PLAY trident framework to design an activity that develops transversal skills
S. R. Isaac; J. de Lima
Teaching Transversal Skills for Engineering Studens: A Practical Handbook of Activities with Tangibles; EPFL, 2024. Radio-Activities: Architecture and Broadcasting in Cold War Berlin
A. Thiermann
Cambridge, MA; London: MIT Press, 2024. All That is Solid
A. Thiermann
Transcalar Prospects in Climate Crisis; Zurich: Lars Müller, 2024.
